Pdfs
of most of the following papers are available here
Pre-print
articles (non peer-reviewed) are indicated with
pp
Graduate
students in the lab are indicated with **,
undergraduate with *
58) JD. Daza, Y.
Chiari, E. Daza-Herrera,
MS. Glaberman,S. Glaberman, O.
Heide, A. Herrera-Martinez, R. Thomas (2022)
A rare case of caudal bifurcation in a
miniaturized gecko from Puerto Rico. The
Anatomical Record, accepted
57) N. Moreno
**, A. Heaton
**, K. Bruening*,
E.
Milligan*,
D. Nelson,S. Glaberman, Y.
Chiari (2022) Hybridization and low
genetic diversity in the endangered Alabama
red-bellied turtle (Pseudemys alabamensis).
Ecology
and Evolution, accepted
Photo
credit: N. Moreno
56) N. Katlein
**, M. Ray
*, A. Wilkinson, J. Claude, MA. Kiskowski,B.
Wang,S. Glaberman, Y.
Chiari (2022) Does colour impact responses
to images in geckos? Journal
of Zoology, 317: 138-146
Photo
credit: R. Moreau
55) EL. Jensen, MC.
Quinzin, JM. Miller, MA. Russello, RC. Garrick,
DL. Edwards,S. Glaberman, Y.
Chiari, N. Poulakakis, W. Tapia, JP.
Gibbs, A. Caccone (2022) A new lineage of
Galapagos giant tortoises identified from museum
samples. Heredity, 128: 261-270
54) R. Roy, N.
Moreno**, SA. Brockman, A. Kostanecki, A. Zambre,
C. Holl, EM. Solhaug, A. Minami, E. Snell-Rood, M.
Hampton, MA. Bee, Y. Chiari, AD. Hegeman,
CJ. Carter (2022) Convergent evolution of a novel
blood-red nectar pigment in vertebrate-pollinated
flowers. PNAS,
119: e2114420119
53) S.
Glaberman, SE. Bulls, JM. Vazquez, Y.
Chiari, VJ. Lynch
(2021) Concurrent evolution of anti-aging gene
duplications and cellular phenotypes in long-lived
turtles. Genome Biology and Evolution,
evab244
pp6) S.
Glaberman, SE. Bulls, JM. Vazquez, Y.
Chiari, VJ. Lynch
(2021) Concurrent evolution of anti-aging gene
duplications and cellular phenotypes in long-lived
turtles. Publicly
available pre-print on bioRxiv
https://www.biorxiv.org/content/10.1101/2021.07.07.451454v1
52) T. Glimm, M.A. Kiskowski, N.
Moreno**, Y. Chiari (2021) Capturing and
analyzing pattern diversity: an example using the
melanistic spotted patterns of leopard geckos. PeerJ,
9: e11829
51) MM. Lamont, N.
Moreno**, FY. Camacho-Sanchez, HH. Acosta-Sanchez,
S. Glaberman, MA. Reyes-Lopez, Y. Chiari (2021)
Genetic diversity of immature Kemp's ridley (Lepidochelys
kempii) individuals from the northern Gulf
of Mexico. Aquatic Conservation: Marine and
Freshwater Ecosystems, 31(10): 3003 - 3010
50)K. Pabis^, Y. Chiari^,
C. Sala, E. Straka, R. Giacconi, M. Provinciali,
X. Li, H. Brown-Borg, K. Novikowski, T.
Valancak, C. Gundacker, P. Garagnani, M.
Malavolta (2021)Elevated metallothionein expression in
long-lived species mediates the influence of
cadmium accumulation on aging. GeroScience,
43: 1975 - 1993
^Shared first authorship
pp5) R. Roy, N.
Moreno**, SA. Brockman, A. Kostanecki, A. Zambre,
C. Holl, EM. Solhaug, A. Minami, E. Snell-Rood, M.
Hampton, MA. Bee, Y. Chiari, AD. Hegeman,
CJ. Carter(2021) Convergent evolution of
a novel blood-red nectar pigment in
vertebrate-pollinated flowers. Publicly
available pre-print on bioRxiv https://www.biorxiv.org/content/10.1101/2021.03.24.436888v1
pp4) T. Glimm, M.A. Kiskowski, N.
Moreno**, Y. Chiari (2021) Capturing and
analyzing pattern diversity: an example using the
melanistic spotted patterns of leopard geckos.
Publicly available pre-print on bioRxiv https://www.biorxiv.org/content/10.1101/2021.03.23.436685v1
pp3) N. Katlein**, M. Ray*,
A. Wilkinson, J. Claude, M.A. Kiskowski, B. Wang, S. Glaberman,
Y. Chiari (2021) Does colour impact
attention towards 2D images in geckos? Publicly
available pre-print on bioRxiv https://www.biorxiv.org/content/10.1101/2021.02.03.429594v1
pp2) N.
Moreno**, L. Howard, S. Relyea, J. Dunnigan, M.
Boyer, M. Kardos, S. Glaberman, G. Luikart, Y.
Chiari (2021) Gene expression estimates:
influence of sequencing library construction, fish
sampling methods, and tissue harvesting time. Publicly
available pre-print on Authorea
https://www.authorea.com/users/391297/articles/505449-gene-expression-estimates-influence-of-sequencing-library-construction-fish-sampling-methods-and-tissue-harvesting-time
49)Y. Chiari Morphology (2020) In "Galapagos Giant
Tortoises" J. Gibbs, L. Cayot, W.A. Tapia
(Eds.). Section III, Chapter 8. Publisher
Elsevier
48)WL
Allen, N. Moreno*, T. Gamble,Y. Chiari(2020) Ecological,
behavioral, and phylogenetic influences on the
evolution of dorsal color pattern in gecko.Evolution,
74: 1033 - 1047
Digest on this article available
here
47) M.A. Kiskowski, T.
Glimm, N. Moreno*, T. Gamble, Y.
Chiari
(2019) Isolating and quantifying the role of
developmental noise in generating phenotypic
variation. PLoS Computational Biology,
15(4): e1006943
46) Quesada et al. (2019) Giant
tortoise genomes provide insights into longevity
and age-related disease. Nature Ecology and
Evolution, 3: 87 - 95
pp1) M.A. Kiskowski, T.
Glimm, N. Moreno*, T. Gamble, Y.
Chiari
(2018) Isolating and quantifying the role of
developmental noise in generating phenotypic
variation. Publicly available pre-print on bioRxiv
334961
https://www.biorxiv.org/content/10.1101/334961v1
45) Y.
Chiari,
S. Glaberman, V.J. Lynch (2018) Insights on
cancer resistance in vertebrates: reptiles as a
parallel system to mammals. Nature Reviews
Cancer, 18: 5252 (Correspondence)
44) P. Sykora , Y.
Chiari,
A. Heaton**, N. Moreno**, S. Glaberman, R. Sobol
(2018) Application of the CometChip platform to
assess DNA damage in field collected blood
samples from turtles.
Environmental and Molecular Mutagenesis,
59: 322 - 333
43) A. Hylton**, Y.
Chiari,
I. Capellini, MG. Barron, S. Glaberman (2018) Mixed
phylogenetic signal in fish acute toxicity
across chemical classes. Ecological
Applications, 28: 605 - 611
42) Y.
Chiari,
A. van der Meijden, A. Caccone, J. Claude, B.
Gilles (2017) Self-righting potential and the
evolution of shell shape in Galapagos tortoises.
Scientific Reports, 7: 15828
41) Y.
Chiari,
N. Moreno*, J. Elmore**, A. Hylton**, A. Ray*,
R. Burkhardt**, S. Glaberman (2017) Widespread
occurrence of Batrachochytrium dendrobatidis
in Southern Alabama, USA. Herpetological
Review, 48: 356 - 359
40) Y.
Chiari,
S. Glaberman, P. Tarroso, A. Caccone, J. Claude
(2016) Ecological and evolutionary influences on
body size and shape in Galapagos marine iguana (Amblyrhynchus
cristatus). Oecologia, 181: 885 -
894.
39) DL. Martin, Y.
Chiari,
E. Boone, TD. Sherman, C. Ross, S.
Wyllie-Echeverria, JK. Gaydos, AA. Boettcher
(2016) Functional, phylogenetic and
host-geographic signatures of Labyrinthula
spp. provide for putative species delimitation
and a global-scale view of seagrass wasting
disease. Estuaries and Coasts 39: 1403 -
1421.
38) N. Poulakakis, DL. Edwards, Y.
Chiari,
RC. Garrick, E. Benavides, MA. Russello, GJ.
Watkins-Colwell, S. Glaberman, W. Tapia, JP.
Gibbs, LJ. Cayot, A. Caccone (2015) Description
of a new Galapagos giant tortoise species (Chelonoidis,
Testudines, Testudinidae) from Cerro Fatal on
Santa Cruz Island. PLoS One
10: e0138779.
37) B. Gasse, Y.
Chiari,
J. Silvent, T. Davit-Beal, J-Y. Sire (2015)
Amelotin: an enamel matrix protein that
experienced distinct evolutionary pathways in
amphibians, sauropsids and mammals. BMC
Evolutionary Biology 15: 47.
36) Y.
Chiari,
S. Glaberman,N.
Serén**,
MA. Carretero, I. Capellini (2015) Phylogenetic
signal in amphibian sensitivity to copper sulfate
relative to experimental temperature. Ecological
Applications 25: 596 - 602.
35) J.
Romiguier, P. Gayral, M. Ballenghien, A. Bernard,
V. Cahais, A. Chenuil, Y. Chiari, R.
Dernat, L. Duret, N. Faivre, E. Loire, JM.
Lourenco, B. Nabholz, C. Roux, G. Tsagkogeorga,
AA-T. Weber, LA. Weinert,K. Belkhir, N. Bierne, S. Glemin, N. Galtier(2014)Comparative population genomics in
animals uncovers the determinants of genetic
diversity. Nature 515: 261 - 263.
34) N.
Serén**,
S. Glaberman, MA. Carretero, Y. Chiari (2014)Molecular
evolution and functional divergence of the
metallothionein gene family in vertebrates. Journal
of Molecular Evolution 78: 217 - 233. Journal
Cover
33) E.
Loire,
Y. Chiari, A. Bernard, V. Cahais, J.
Romiguier, B. Nabholz, JM. Lourenço, N. Galtier
(2013) Population genomics of the endangered
giant Galapagos tortoises. Genome Biology 14:
R136.
32) Y. Chiari, A. van der Meijden, M. Mucedda, N.
Wagner, M. Veith (2013) No detection of the pathogen Batrachochytrium dendrobatis in Sardinian cave salamanders, genus
Hydromantes.Amphibia-Reptilia 34: 136
-141.
31) P. Orozco-terWengel, Y. Chiari, DR. Vieites, M. Perdono, E. Louis Jr
(2013) Isolation and characterization of
four polymorphic microsatellite loci for the
Malagasy spider tortoise Pyxis
arachnoides and cross-amplification in Pyxis
planicauda. Amphibia-Reptilia
34: 125 - 128.
30)
JM. Lourenco**,
S. Glemin, Y. Chiari, N. Galtier (2013) The
determinants of the molecular substitution
process in turtles. Journal
of Evolutionary Biology 26: 38-50.
29)
Y.
Chiari, V. Cahais, N.
Galtier, F. Delsuc (2012) Phylogenomic analyses
support the position of turtles as the sister
group of birds and crocodiles (Archosauria). BMC
Biology 10: 65.
28)
V. Cahais,
P. Gayral, G. Tsagkogeorga, J. Melo-Ferreira, M.
Ballenghien, L. Weinert, Y. Chiari, K.
Belkhir, V. Ranwez, N. Galtier (2012)
Reference-free transcritpome assembly in
non-model animals from next-generation
sequencing data. Molecular
Ecology Resources 12: 834-845.
27) Y. Chiari, A. van
der Meijden, M. Mucedda, JM. Lourenco**,
A. Hochkirch, M. Veith (2012) Phylogeography of
Sardinian cave salamanders (genus Hydromantes)
is mainly determined by geomorphology. PLoS One
7(3): e32332.
26)
JM. Lourenco**,
J. Claude, N. Galtier, Y. Chiari (2012)
Dating the cryptodiran nodes: origin and
diversification of the turtle superfamily
Testudinoidea. Molecular
Phylogenetics and Evolution 62: 496- 507.
25)
Y. Chiari, J. Claude (2012) Morphometric
identification of individuals when there are
more shape variables than reference specimens: a
case study in Galapagos tortoises. Comptes
rendus Biologies 335: 62-68.
24) P. Gayral, L.
Weinert, Y. Chiari, G. Tsagkogeorga, M.
Ballenghien, N. Galtier (2011) Next-generation
sequencing of transcriptomes: a guide to RNA
isolation in non-model animals. Molecular
Ecology Resources 11: 650-661.
23) Y. Chiari,
N. Galtier (2011) RNA extraction from sauropsids
blood: evaluation and improvement of methods. Amphibia-Reptilia
32: 136-139.
22) Y.
Chiari,
J. Claude (2011) Study of the carapace shape and
growth in two Galapagos tortoise lineages. Journal of
Morphology 272: 379-386.
21) Y. Chiari^, K. Dion^, J. Colborn^, A.
Parmakelis, J. Powell (2010) On the possible
role of tRNA base modifications in the evolution
of codon usage: Queuosine and Drosophila.
Journal
of Molecular Evolution 70: 339-345.
^Authors contributed equally
20)
Y. Chiari, A. van der Meijden, O. Madsen,
M. Vences, A. Meyer (2009) Base composition,
selection, and phylogenetic significance of indels
in the recombination activating gene-1 in
vertebrates. Frontiers in Zoology 6: 32.
19)
Y. Chiari,
DR. Vieites, J. Guo*,
P. Bora, M. Vences (2009) High haplotype
diversity in a microendemic Malagasy gecko
species, Lygodactylus mirabilis
(Pasteur, 1962). Zootaxa
2269: 43-52.
18) Y. Chiari^, C. Hyseni^*,
TH. Fritts, S. Glaberman, C. Marquez, JP. Gibbs,
J. Claude, A. Caccone (2009) Morphometrics
parallel genetics in a newly discovered and
endangered taxon of Galapagos tortoise. PLoS One
4(7): e6272. ^Authors contributed
equally
17) A. van der Meijden, Y. Chiari,
M. Mucedda, S. Carranza, C. Corti, M. Veith (2009)
Phylogenetic relationships of Sardinian cave
salamanders, genus Hydromantes, based on mitochondrial
and nuclear DNA sequence data. Molecular
Phylogenetics and Evolution 51: 399-404.
16) A. Crottini, Y. Chiari,
V. Mercurio, A. Meyer, M. Vences, F. Androne
(2008) Into the canyons: the phylogeography of the
Malagasy frogs Mantella
expectata and Scaphiophryne
gottlebei in the arid Isalo Massif and its
significance for conservation (Amphibia: Mantellidae and
Microhylidae). Organism Diversity and
Evolution 8: 368-377.